PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.6538s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family AP2
Protein Properties Length: 247aa    MW: 28211.7 Da    PI: 9.3158
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.6538s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38e-18102151155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ +++g
  Araha.6538s0010.1.p 102 SHYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYTAARAYDRAAIRFRG 151
                          79*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.1E-10102151IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-15102159IPR016177DNA-binding domain
SMARTSM003807.6E-29103165IPR001471AP2/ERF domain
PROSITE profilePS5103216.766103159IPR001471AP2/ERF domain
CDDcd000185.55E-23103158No hitNo description
Gene3DG3DSA:3.30.730.101.2E-16103158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MLDLNHGILS THNEDDDCKV PTSIVNQEED SINPSNDNLS LITFGILKRK EEVEILPPPP  60
PPESVLSGAG NEWLNLSSMQ RNKQEMLVMK KKSRRGPRSR SSHYRGVTFY RRTGRWESHI  120
WDCGKQVYLG GFDTAYTAAR AYDRAAIRFR GLQADINFIV DDYKQDIEKM KNLSKEEFVQ  180
SLRRASASLA RGGSKYKNTH TRNDHIHLFQ NRGWNAAAAK CNEIRKMEGD IKLGAHNKGN  240
EHNDLEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5762760.0AY576276.1 Arabidopsis thaliana AP2 domain transcription factor (SNZ) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002881639.11e-163hypothetical protein ARALYDRAFT_321616
SwissprotQ6PV671e-153SNZ_ARATH; AP2-like ethylene-responsive transcription factor SNZ
TrEMBLD7LCG41e-163D7LCG4_ARALL; Putative uncharacterized protein
STRINGfgenesh1_pm.C_scaffold_40016731e-163(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108581832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G39250.11e-140AP2 family protein